PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007258
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 291aa    MW: 33082.9 Da    PI: 5.2725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072108PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-12824PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10105148755
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  Er+RR+++N+a+ +Lr+++Pk +      K++K +i   A+ ++ +Lq
  Psi007258 105 HSERKRRKKLNDALYTLRSVVPKiS------KMDKQSIIGDAISHVLDLQ 148
                57*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.45698147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14102163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-11104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-13105161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7105148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-11105152No hitNo description
Gene3DG3DSA:3.30.70.2603.1E-4223284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
XVYEGFSFGR YEHWICREVE KVSDPSISVY REAXTGSLGM DTPVQYTVEA LKSDYYEDQN  60
NQLWLDNMDE IAGQLDWDDS DPEIMGVSKR AAKTNHLQSA SKNMHSERKR RKKLNDALYT  120
LRSVVPKISK MDKQSIIGDA ISHVLDLQTK IQEIQGEIEG LCSSNKGEDH TQISPDMMKP  180
NLEKRFTESG DAKKSVDNFK HGKVLEGKIV EICNAGKDGI YHVRIECKKD VGVLVDLTRA  240
LESFPLEIVN SNVCCFHEAI HCTLYVRSPQ NVEADKLEDM IRQIMTCDYS T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106113ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.9710.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPT70.0B8LPT7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.36e-23bHLH family protein