PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007636
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 261aa    MW: 28567.3 Da    PI: 9.7859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42986468PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-08168217147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Psi007636 168 RRPFSVAEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 217
                      678999********************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.112163222IPR017930Myb domain
SMARTSM007177.0E-7167220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-11168218IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15169249IPR009057Homeodomain-like
CDDcd116603.41E-18169219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
LLQGKKVSDE SYTLDQLGIA HGGKLDSVGF MLEPNPMPTS QACAEDPLFV LSRAVTQPSP  60
RYPTGSASGQ TTAAEGNKSV MKSRSNKING TAGAEVAVTT GGRTQTETNQ WTKSEYEVIN  120
DSPHMQAGSN PGALIVHPIV GAETAQGLAL VPLNHKSRGS EIGKRRIRRP FSVAEVEALV  180
HAVEKLGTGR WRDVKLRAFE QAKHRTYVDL KDKWKTLVHT AKIAPHQRRG EPVPQELLDR  240
VIHAHNYWTD QQAKQQAEVC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-561522581107Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827448.28e-92telomere repeat-binding protein 5
RefseqXP_020527197.18e-92telomere repeat-binding protein 5
RefseqXP_020527201.18e-92telomere repeat-binding protein 5
TrEMBLW1NI312e-90W1NI31_AMBTC; Uncharacterized protein
STRINGERM948643e-91(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-50TRF-like 2