PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007846
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 249aa    MW: 28939.7 Da    PI: 9.6272
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42994027PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.6e-26183248166
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                rW++qe+l+L+++r+em++++r++  k+plW+evs++++e+g++r++k+C+ek+enl k+ykk k+
  Psi007846 183 RWPRQETLTLLKIRSEMDSKFREATHKGPLWDEVSRALAEHGYQRNSKKCREKFENLYKYYKKKKK 248
                8**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.05182240IPR017877Myb-like domain
CDDcd122035.03E-25183239No hitNo description
PfamPF138371.7E-17183248No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQIGEQYGLA ELQQFMVGRG HMLTLAQEMP PEIHLQYHHH QQQQQAQQQQ FHAAFHQRQQ  60
IEAHHQQQQQ NHGNRVYQAS SHPLQHEENR QNHHSYNHHV HQRPGNNGIA QQLSLSSDSP  120
RPPSLSVSPP SKRTISPPGI ISKQQQPPVN VNVNGVPRDQ QTFEDYDEGF DEGDRSGSGG  180
NGRWPRQETL TLLKIRSEMD SKFREATHKG PLWDEVSRAL AEHGYQRNSK KCREKFENLY  240
KYYKKKKKX
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-25Trihelix family protein