PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi007897

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 246aa MW: 28040.5 Da PI: 7.3968

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S37594170	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.2e-32	151	204	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk+++elm+vk+Ltl+hvkSHLQ+YR+ Psi007897 151 PRMRWTSTLHAHFVHAVKLLGGHERATPKSVMELMNVKDLTLTHVKSHLQMYRT 204 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.53E-16	148	204	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-28	149	204	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	151	204	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-7	152	203	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
EKQRQKNICA QGLMRLSGGP EDPRLIMSCL SGGETRKAIE DASSLGLVDS YYGHDFEVSV 60 NKEDYRCSDE FLRDNKTREA PFFRPYEGIL MNRVMTPNHP HSLSDSEDHF QGSSSHPKEI 120 HSCNPSPATI SDSHSCIKSR FMTKRRSMRA PRMRWTSTLH AHFVHAVKLL GGHERATPKS 180 VMELMNVKDL TLTHVKSHLQ MYRTVKGIDK SACPSGHDES EALGTFDGKY FEDFTENEIE 240 YCDRRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-17	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-17	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-17	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-17	152	206	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	152	206	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452363.1	3e-41	probable transcription factor KAN2 isoform X5
TrEMBL	A0A2K2B4F1	2e-39	A0A2K2B4F1_POPTR; Uncharacterized protein
TrEMBL	A0A2K2B4F3	5e-39	A0A2K2B4F3_POPTR; Uncharacterized protein
TrEMBL	B9GZJ1	5e-39	B9GZJ1_POPTR; Uncharacterized protein
TrEMBL	B9GZJ2	5e-39	B9GZJ2_POPTR; Uncharacterized protein
STRING	POPTR_0003s09490.1	8e-40	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-39	G2-like family protein