PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi007907

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 246aa MW: 28693 Da PI: 4.8896

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50071398	PU_ref	Unigene	View CDS
PUT-183a-Picea_sitchensis-24143	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.2	2.4e-09	13	92	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + L+e ++ + ++++lk +W ev+ + ++ ++ ++ +qC+++++ l+k+ykk+++++ + s+++y++ ++ Psi007907 13 WSEAATWILLETWGNKYLQAGKKSLKLEQWFEVATTVsAASKILKTDIQCRNRLDTLKKKYKKERQRSPN------SKWVYYQYMD 92 999********************************788899******************99997......489*9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-17	10	94	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
PGRPEAKGSR DDWSEAATWI LLETWGNKYL QAGKKSLKLE QWFEVATTVS AASKILKTDI 60 QCRNRLDTLK KKYKKERQRS PNSKWVYYQY MDALLNSSPW QAGLPYGMDA GKFVSQVPLR 120 PKVCSNHSRF KEVWDGPGDS PSEEEEEEEE DEEDEEADEG RGLKRRKDDE DSFRILADSI 180 HRFGEIYERI ENSKKQQMLD LEKMRMEFDR DLEMQKRRIL EQTQIELAKI RQGSDDIDAS 240 VTNMSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	165	RGLKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002690.1	4e-70	PREDICTED: trihelix transcription factor ASIL1-like
Refseq	XP_024449469.1	4e-70	trihelix transcription factor ASIL1
TrEMBL	B8LRP6	1e-109	B8LRP6_PICSI; Uncharacterized protein
STRING	POPTR_0001s18000.1	1e-69	(Populus trichocarpa)
STRING	XP_006427040.1	3e-69	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-47	Trihelix family protein