PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007977
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 242aa    MW: 28067.1 Da    PI: 4.6385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072186PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-3400PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.8e-073382255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
               r++   +E+ RR+r+N    +L++llP  +     +K +     e+A++YI++L+
  Psi007977 33 RESQTVAEQLRRKRMNYLSTQLKSLLPAtP-----PKIDRCGLYEEAINYIRKLE 82
               788899**********************55.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-112995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.7473181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-103293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-73386No hitNo description
PfamPF000107.2E-53382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-63787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MHSDGQDTDT QDSDDLQEIV WRDVDQMNKI TTRESQTVAE QLRRKRMNYL STQLKSLLPA  60
TPPKIDRCGL YEEAINYIRK LEEDLHQLQR RRDHLLAIQS GKTANENIDH KVTVEIYDRE  120
AIISITSQRR PRYMWRILEE LETHGLDVET SQLFTGESFV LLYFHVNFRD DISQDPVQIQ  180
TSLECRLKXN LLDSYWGEIR TVADCVAVMA LAHNCHATTA ADYCHFTSSL SDGVVISEDD  240
EE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.50630.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPL51e-135B8LPL5_PICSI; Uncharacterized protein