PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi008016

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YA

Protein Properties

Length: 239aa MW: 26447 Da PI: 9.2329

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-9041	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2.1e-32	141	197	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy +Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF Psi008016 141 EEPVYVNAKQYYGILRRRQSRAKAESENKL-IKNRKPYLHESRHLHALKRARGCGGRF 197 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-37	139	200	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.292	140	200	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.9E-27	142	197	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.8E-23	143	165	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	145	165	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.8E-23	174	197	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
GKAKPDLKAL IGDWRFFRMR NLSLNWLIDL ATRDQQQSLA EAVKGIDGSA PDEQQPQADP 60 VQQEAPPPGM IPPPAMTLLP PEFVMPHTQL ELGQAMVRAA YPYPDPYFGG IVAAYGPQAV 120 IHPHMLGVPH AGLPLPSDAV EEPVYVNAKQ YYGILRRRQS RAKAESENKL IKNRKPYLHE 180 SRHLHALKRA RGCGGRFLNA KKQDEVSQEN NSNGNIVHVP SVDKPDAEKK SSSVQNTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	140	204	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020268973.1	1e-70	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268974.1	1e-70	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268975.1	1e-70	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268976.1	1e-70	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	1e-48	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2K1KAU8	4e-66	A0A2K1KAU8_PHYPA; Uncharacterized protein
STRING	PP1S42_174V6.1	8e-67	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-51	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]