PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi008023

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 239aa MW: 26823.5 Da PI: 5.3422

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S38840529	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.6	1.4e-17	120	184	2	66
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W +e++ L+++r+em+ ++r+++l++ We+vs+k++e g++rs++ Ckek+e++n k k+ Psi008023 120 WATEETQNLLRIRSEMHLKFRDSNLQAVAWEDVSRKLAELGYRRSAQACKEKIEQVNLTSDKAKD 184 ******************************************************99866655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.249	112	176	IPR017877	Myb-like domain
Pfam	PF13837	2.1E-13	119	185	No hit	No description
CDD	cd12203	2.31E-18	120	176	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MQSGGQYGIH DIQQLMMERG PPPRMFALSP DMLSHPMKPP GLHPHSIPHH FIPFPLDHHY 60 QHSLVTHHAQ QQAMQEQIGL GDDSSENQSS FANRTAIQAE TEDDDDGIEG EDDEDNDDGW 120 ATEETQNLLR IRSEMHLKFR DSNLQAVAWE DVSRKLAELG YRRSAQACKE KIEQVNLTSD 180 KAKDGKSFML FGELEAVCNG GSRVNNGGAT NAALPEEVPA KPEQKNKEKK KKKSSWILX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.14703	0.0	shoot

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-20	GT-2-like 1