PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008029
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 239aa    MW: 27891.6 Da    PI: 7.0081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072820PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-0787130855
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +E+ RR+r++s   +L +llP+ +      Kl+     e++++YI++L+
  Psi008029  87 AEQLRRKRMKSLCIQLESLLPTtP-----AKLDRCGLFEETINYIRKLE 130
                8*********************55.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.65E-679134No hitNo description
PROSITE profilePS5088812.53879129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1080143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-1080141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-585135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-487130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
XTLCVSSCLN LYGIRLPVLH SLPDSRTVYS NVPQCDRQVD YRVTTSRKRP SEVDLADLQD  60
YNDLQEKVWQ DVDRMLKFSS KESQIFAEQL RRKRMKSLCI QLESLLPTTP AKLDRCGLFE  120
ETINYIRKLE ENIQQLKRKR ENLLAIQSGN TSNENMEIKV AVEFYGREAI ISITSQKGPR  180
HMWRILEELE NHGLDVETSQ LFTGESFVLV FFHVNFREHI SQDPGQIQSS LECRLKLTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMX61e-161B8LMX6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-07bHLH family protein