PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008125
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 233aa    MW: 25208.6 Da    PI: 9.5789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-15565PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-203887255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrd ++    + r +lg+f+taeeAa+a++ a+ +l+g
  Psi008125 38 HFRGVRKRP-WGRYAAEIRDpWK----KVRLWLGTFDTAEEAARAYDTAAISLRG 87
               69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-3938101IPR001471AP2/ERF domain
CDDcd000182.12E-273896No hitNo description
PROSITE profilePS5103223.1963895IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-223897IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-313895IPR001471AP2/ERF domain
PfamPF008471.6E-123887IPR001471AP2/ERF domain
PRINTSPR003671.3E-103950IPR001471AP2/ERF domain
PRINTSPR003671.3E-106177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
XTPLPPEALL LAGNPFCLRW VMAPSNTGRD DNGERGVHFR GVRKRPWGRY AAEIRDPWKK  60
VRLWLGTFDT AEEAARAYDT AAISLRGPKA KTNFAYSSPS SSSSLHNNQS SSQNSSTVES  120
WPSAAPVTRS GDLELHASFL PRIGVSTGRR GFNGGNPRSE RRRSLSEKNG GRKAEGAEAR  180
TALSDSDSSS SAILDGDAQA PPPPPAAKRP FLLDLNLPPP LDDDDEQPQQ IGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-203194271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.176100.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ7H5K83e-92J7H5K8_9SPER; Transcription factor 1 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.19e-20ERF domain protein 12