PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi008155

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HSF

Protein Properties

Length: 232aa MW: 26524.5 Da PI: 7.8103

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S26051563	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.3	7.8e-36	15	106	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws +nsf+v++++ef++ +Lp+yFkhsnf+SFvRQLn+YgF+k++ e+ weF+++ F kg+++ll++i+ Psi008155 15 FLTKTYDMVDDPATNAMVSWSPGSNSFIVWNPTEFSRVLLPTYFKHSNFSSFVRQLNTYGFHKIDPER---------WEFANEGFLKGHRHLLKNIH 102 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Psi008155 103 RRKP 106 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.28E-35	10	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-59	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.4E-38	11	104	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-31	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-19	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-19	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	54	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEGSQNGSSN GPPPFLTKTY DMVDDPATNA MVSWSPGSNS FIVWNPTEFS RVLLPTYFKH 60 SNFSSFVRQL NTYGFHKIDP ERWEFANEGF LKGHRHLLKN IHRRKPVHSH SQQQQKGESL 120 SGGACVEIKQ LEDETEKLRQ EKQGLVMELV RLKQLVQHHD KIAHIATTNK KRRLPKHDEV 180 LEIGENGCTS SQIVRYDPGK GDAFNRDSPD KLETSMDAFK NFFDDVPVDA RX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-25	7	104	13	120	Heat shock factor protein 1
5d5u_B	4e-25	13	104	27	129	Heat shock factor protein 1
5d5v_B	4e-25	13	104	27	129	Heat shock factor protein 1
5d5v_D	4e-25	13	104	27	129	Heat shock factor protein 1
5hdg_A	3e-25	13	104	8	110	Heat shock factor protein 1
5hdn_A	3e-25	13	104	8	110	Heat shock factor protein 1
5hdn_B	3e-25	13	104	8	110	Heat shock factor protein 1
5hdn_C	3e-25	13	104	8	110	Heat shock factor protein 1
5hdn_D	3e-25	13	104	8	110	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.7541	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854048.2	5e-76	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	4e-68	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A0D6R070	1e-74	A0A0D6R070_ARACU; Uncharacterized protein
TrEMBL	U5CZX6	9e-75	U5CZX6_AMBTC; Uncharacterized protein
STRING	ERN15515	1e-75	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	7e-64	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]