PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi008228

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 228aa MW: 25525.6 Da PI: 10.5146

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-9599	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.7e-09	116	164	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r +Rt ++k++w+++l Psi008228 116 AWTLSEVMKLVEGVSRCGAGRWSEIKRLAFsayGHRTSVDLKDKWRNLL 164 7*************************999999***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.977	109	168	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-13	110	169	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-16	111	169	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-8	113	166	IPR001005	SANT/Myb domain
CDD	cd11660	1.77E-19	115	165	No hit	No description
Pfam	PF00249	3.6E-7	116	164	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
XGVRRGRPRK NCTSLLKYNP NGMAAKLVKK ALSVRAARYD GDGADMKWRT RVPSEPVEQS 60 VDENSQNDEN MLLAVTTEDQ SISDPLDYDM EEDNSDDYVA TVPTAKGGTR RKHHRAWTLS 120 EVMKLVEGVS RCGAGRWSEI KRLAFSAYGH RTSVDLKDKW RNLLRASYAQ LQSNKEGRSQ 180 RKHASVPIPA PILVRVRELA SMQSRSVCTP NSSSVSRSGR TVHKKLPV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	9	RRGRPRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.6445	1e-168	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006849623.1	6e-80	uncharacterized protein LOC18439394 isoform X1
Refseq	XP_011625298.1	6e-80	uncharacterized protein LOC18439394 isoform X1
Refseq	XP_020526080.1	6e-80	uncharacterized protein LOC18439394 isoform X1
Refseq	XP_020526081.1	6e-80	uncharacterized protein LOC18439394 isoform X1
Refseq	XP_020526082.1	4e-80	uncharacterized protein LOC18439394 isoform X2
TrEMBL	W1PTQ9	1e-78	W1PTQ9_AMBTC; Uncharacterized protein
STRING	ERN11204	2e-79	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	9e-46	TRF-like 6