PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008232
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 228aa    MW: 26537.1 Da    PI: 6.0526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-531478PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-0773119555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +E+ RR+r++s   +L +llP  +      Kl+     e++++YI++L+
  Psi008232  73 QTFAEQLRRKRMKSLCTQLESLLPAtP-----AKLDRCGLFEETINYIRKLE 119
                5668*********************55.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.60168118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.73E-668123No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1069132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1070130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-573119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-474124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MASNCLFSHS LPDSRTVYSN VPQCDRQVDC RDTASRKRPS EVDLADLQEH NDLQENVWRD  60
VDRMMEFSSK ESQTFAEQLR RKRMKSLCTQ LESLLPATPA KLDRCGLFEE TINYIRKLEE  120
NIHGLKKKRE NLLAIQSGKT ANENTEIKVA VEFYGREAII SITSQRGPRQ MWKILEELES  180
HGLDVETSQL LPGEFFVLVF FHVNFRDYIS QDPAQIQTSL EYRLKLTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NZC31e-169A9NZC3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-06bHLH family protein