PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008251
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 227aa    MW: 26394.8 Da    PI: 8.7528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-26788PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.6e-08125146426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C ++ + G+C+ G +C FaHg
  Psi008251 125 ETCVNYKK-GYCRKGLTCEFAHG 146
                6799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-5118147IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.413121148IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-5126146IPR000571Zinc finger, CCCH-type
SMARTSM0035638156179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDISISSPVL SPQFAFYSPS DGQGIATWID ANNVRSISEH LWKSNRHGVN QLFSDFCDSN  60
GRLQWNMGII EEDNGFEDQS SDEFRMYKFK VVICMRDTSH DWTRCPFAHR GERARRRHPS  120
LYCGETCVNY KKGYCRKGLT CEFAHGLFES WLHPHRYRTK RCKDGVNCNR RVCFFAHRDE  180
EIRFPSKPSS SKMKDHKNLQ ITPRNRSACT NVVIPQIYNA ISQDVVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596057.12e-45zinc finger CCCH domain-containing protein 35-like
TrEMBLA0A3S3PTD77e-43A0A3S3PTD7_9MAGN; Zinc finger CCCH domain-containing protein 20
STRINGLus100350067e-43(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-44C3H family protein