PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008523
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 218aa    MW: 24439.2 Da    PI: 8.4653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S53188726PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-122974555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+L+
  Psi008523 29 HIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLE 74
               899***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1352473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-162887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-102974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-172986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-112978No hitNo description
SMARTSM003532.1E-133079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
PQVRISSSTI GNRHYNNLPN KTSGHSLDHI MAERKRREKL SQRFIALSAI VPGLKKMDKA  60
SVLGDAIKYV KQLEDRIKAL EEQAPKITVQ SVVYVKKEEL CTDDQEDSDK FSSINSSSDN  120
TVIEGVLTPE IEARLVDKNV LIHIHCEKKK HLLVEFLAEL EKLQLTVLNA SILSFSESSF  180
DLTFNAKMEE KCDLTGKVIA KALQALFKKT TSIASPPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-162790770Transcription factor MYC2
5gnj_B7e-162790770Transcription factor MYC2
5gnj_E7e-162790770Transcription factor MYC2
5gnj_F7e-162790770Transcription factor MYC2
5gnj_G7e-162790770Transcription factor MYC2
5gnj_I7e-162790770Transcription factor MYC2
5gnj_M7e-162790770Transcription factor MYC2
5gnj_N7e-162790770Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237ERKRRE
23338RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002972921.26e-67transcription factor bHLH25
RefseqXP_002988006.21e-66uncharacterized protein LOC9656084
TrEMBLA0A176VHM22e-69A0A176VHM2_MARPO; Uncharacterized protein
TrEMBLA0A2R6X5U92e-69A0A2R6X5U9_MARPO; Uncharacterized protein
STRINGEOX918229e-64(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-46bHLH family protein