PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008572
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 215aa    MW: 24214.3 Da    PI: 5.7345
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-21668PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.73.5e-42411411101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaC++lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++++e+r+d++ss+vyeA+ar+rdP+yG++g + +lqqq++ l+++la+++++
  Psi008572  41 PCAACRTLRRRCGDKCVLAPYFPPNDPQKFATVHRVFGASNIIRILQDVDTEHRDDTVSSMVYEARARLRDPIYGCAGAVCQLQQQVCDLQSQLATAQAQ 140
                7***********************************************************************************************9998 PP

     DUF260 101 l 101
                +
  Psi008572 141 I 141
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.40740141IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4141138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
ARGPLKDIVT AIEVYFQDWI CRRLQIYKMS EGNPRTKVAT PCAACRTLRR RCGDKCVLAP  60
YFPPNDPQKF ATVHRVFGAS NIIRILQDVD TEHRDDTVSS MVYEARARLR DPIYGCAGAV  120
CQLQQQVCDL QSQLATAQAQ ILNLHCQQAN LLAFLTDNNS SFGKGGETAD YDYDEPLGSS  180
WTDSPASQVT DGEKDMNVLF QFQEMEMFTW SRNGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-404014810118LOB family transfactor Ramosa2.1
5ly0_B7e-404014810118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022875086.11e-59LOB domain-containing protein 1-like
SwissprotQ9LQR04e-51LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7BKX06e-58A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
TrEMBLA0A3Q7J1V14e-58A0A3Q7J1V1_SOLLC; Uncharacterized protein
STRINGSolyc11g072470.1.11e-58(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-45LOB domain-containing protein 1