PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008638
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24738.5 Da    PI: 10.0381
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422017PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-13319PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-30251150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien + rqvtfskRrng+lKKA+ELSvLCd+eva+i+fs++gkl+e++
  Psi008638  2 KRIENATSRQVTFSKRRNGLLKKAHELSVLCDVEVALIVFSPRGKLFEFA 51
               79***********************************************8 PP
2K-box79.58.1e-2770163497
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 +++ +++++a++ ++e+a++++ i+ L+  qR++lG++Les+ lk+L+qLe+q+e++l++iR++K+e+l++qi++l +ke+ l een  L+k+
  Psi008638  70 DTTNTTKKQDAKYRRREIANMEETIKILELRQRKMLGKELESCALKDLNQLESQVERGLSRIRARKTEILVDQIKQLERKERILTEENALLSKR 163
                34455899999******************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.735154IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-33153IPR002100Transcription factor, MADS-box
CDDcd002652.82E-41167No hitNo description
SuperFamilySSF554551.09E-31178IPR002100Transcription factor, MADS-box
PfamPF003192.5E-27350IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-181631IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-183152IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2275163IPR002487Transcription factor, K-box
PROSITE profilePS5129713.25980172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKRIENATSR QVTFSKRRNG LLKKAHELSV LCDVEVALIV FSPRGKLFEF ANPSMQKMLE  60
RYEKCSEEND TTNTTKKQDA KYRRREIANM EETIKILELR QRKMLGKELE SCALKDLNQL  120
ESQVERGLSR IRARKTEILV DQIKQLERKE RILTEENALL SKRHGVDPLY VDGSVLTNPV  180
SRFGSIQINE VETQLVIRQP NIRDHFLVNS FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-193741082MEF2 CHIMERA
6byy_B7e-193741082MEF2 CHIMERA
6byy_C7e-193741082MEF2 CHIMERA
6byy_D7e-193741082MEF2 CHIMERA
6bz1_A7e-193741082MEF2 CHIMERA
6bz1_B7e-193741082MEF2 CHIMERA
6bz1_C7e-193741082MEF2 CHIMERA
6bz1_D7e-193741082MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220768.11e-63MADS-box protein SOC1
RefseqXP_029127631.11e-63MADS-box protein SOC1
RefseqXP_029127634.11e-63MADS-box protein SOC1
RefseqXP_029127637.11e-63MADS-box protein SOC1
RefseqXP_029127638.11e-63MADS-box protein SOC1
RefseqXP_029127641.11e-63MADS-box protein SOC1
RefseqXP_029127643.11e-63MADS-box protein SOC1
TrEMBLD5A8T51e-153D5A8T5_PICSI; Uncharacterized protein
STRINGERM965323e-61(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-58AGAMOUS-like 42