PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008672
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 211aa    MW: 23574.8 Da    PI: 9.7842
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38851937PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-09118167147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ I  +     k+Rt  ++k++w ++
        Psi008672 118 RRPFTVAEVEVLVQAVEKLGTGRWREIKLHAFdhaKHRTYVDLKDKWKTL 167
                      679****************************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.121113172IPR017930Myb domain
SuperFamilySSF466891.2E-17115209IPR009057Homeodomain-like
SMARTSM007175.7E-8117170IPR001005SANT/Myb domain
PfamPF002493.3E-6118167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-12118168IPR009057Homeodomain-like
CDDcd116608.49E-19119169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLSHAASRTS STYPKASCSG TSIDIEVNKG LIDGSCSETN GMFSADVAQM AGCQTQVDIN  60
QWVMSESDLI ISSSHPQAVS YSGALVVHPS VDDSNQGLTL VPVRHRSRRA DIGKRRLRRP  120
FTVAEVEVLV QAVEKLGTGR WREIKLHAFD HAKHRTYVDL KDKWKTLVHT ATIAPHQRRG  180
EPVPLELLDR VIRAHSYWTK RQTNQMVNHS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-521022081107Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827448.22e-61telomere repeat-binding protein 5
RefseqXP_020527197.12e-61telomere repeat-binding protein 5
RefseqXP_020527201.12e-61telomere repeat-binding protein 5
SwissprotQ6R0E36e-51TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLW1NI315e-60W1NI31_AMBTC; Uncharacterized protein
STRINGERM948648e-61(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-44TRF-like 2