PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008687
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 210aa    MW: 23659.3 Da    PI: 6.3927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-5522PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS232.61.8e-715210158362
       GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256
                 +++g +La++A++++v+f+f+ ++a++led+++++++vkpgE++aVn+vlqlhrll  ++++ s ++d vLk + sl+Pk+v+vve+ea+hn++ Fl+r
  Psi008687   5 CKKIGMKLAQLADSVNVEFDFRGVMADKLEDIKPWMFQVKPGEVIAVNSVLQLHRLLYLDAPTGSsPIDVVLKSIGSLRPKIVTVVEHEANHNGPVFLDR 104
                6899*****************************************************9999888779********************************* PP

       GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                f+eal+yys++fdslea     ++ ++ + + ++++ei+n+vaceg++r+erhetl +Wr+rl++aGF++ +l+++a kqa++ll  ++++gy+vee++g
  Psi008687 105 FVEALHYYSTMFDSLEACNVLPNSIEKLLAELYIQKEICNIVACEGRDRIERHETLFHWRMRLSRAGFRQSHLGSNAFKQASMLLTLFSGEGYTVEESNG 204
                ***************665445555556666677******************************************************************* PP

       GRAS 357 slvlgW 362
                sl+lgW
  Psi008687 205 SLTLGW 210
                ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.0911202IPR005202Transcription factor GRAS
PfamPF035146.2E-695210IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
AETCCKKIGM KLAQLADSVN VEFDFRGVMA DKLEDIKPWM FQVKPGEVIA VNSVLQLHRL  60
LYLDAPTGSS PIDVVLKSIG SLRPKIVTVV EHEANHNGPV FLDRFVEALH YYSTMFDSLE  120
ACNVLPNSIE KLLAELYIQK EICNIVACEG RDRIERHETL FHWRMRLSRA GFRQSHLGSN  180
AFKQASMLLT LFSGEGYTVE ESNGSLTLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-284210171367Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313852.12e-94DELLA protein SLR1-like
RefseqXP_017608160.12e-94PREDICTED: DELLA protein SLR1-like
SwissprotQ84TQ72e-79GAI_GOSHI; DELLA protein GAI
TrEMBLX5CYB61e-134X5CYB6_PINTB; RGA
STRINGEOY309341e-92(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-76GRAS family protein