PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008744
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 208aa    MW: 21380.1 Da    PI: 10.8271
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42988449PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.1e-185890133
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
               C++Cgt+++p WR+gpdg+k+LCnaCGl++ ++
  Psi008744 58 CASCGTSNSPEWRKGPDGSKSLCNACGLRFSRN 90
               *****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7965285IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-125290No hitNo description
SMARTSM004011.5E-1152103IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-165690IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.30E-1257102No hitNo description
PROSITE patternPS0034405883IPR000679Zinc finger, GATA-type
PfamPF003202.6E-155888IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
PSLKSLVDAS ITMAKNDGMA QTPRKSEQGD KDNSNNGGGS VATLAAVAAA AAAQSKKCAS  60
CGTSNSPEWR KGPDGSKSLC NACGLRFSRN ISRAKKREER ARIAAEVAAN GGIIPPHLRK  120
KPGADIKKQK KQKLNPPSIT ETNANQNKVT TTISGGSGLI PPPASASAVT DNLQPLKQMN  180
TSNAQDDPSI QLARAAAQAA AAAGLRQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.24e-11GATA transcription factor 3