PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi008847

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 203aa MW: 22542.6 Da PI: 7.0781

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-10199	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.4	1.6e-17	154	203	1	50
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqC 50 rW++qe+laL+++r+em+ ++r+++lk+plWe+vs++++e g+ rs+k+C Psi008847 154 RWPRQETLALLKIRSEMDANFRDASLKGPLWEDVSRRLAELGYYRSAKKC 203 8************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.74E-21	153	203	No hit	No description
Pfam	PF13837	2.4E-10	153	203	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MQSTSQYGVP EVPAQFVVGR VPSSGAHSHI FSLAHDMSLS PKNSSPHPQP QSHQSSEQQQ 60 QQHHGSNQQM IAHKIRLESD SPEVAAPSPG HPKLNKSSNT TTNNYSSSNH NNNTISTDNY 120 NKQQQQQQQE IVQLGGDEDV LGSEDCERGS AGNRWPRQET LALLKIRSEM DANFRDASLK 180 GPLWEDVSRR LAELGYYRSA KKC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.16985	0.0	needle

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-24	Trihelix family protein