PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008904
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 201aa    MW: 22793.4 Da    PI: 5.7117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420673PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-182674355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y G+r+++ +g+W+AeIrdp+    r+r++lg+f+tae+Aa+a++aa+ +++g
  Psi008904 26 YIGIRQRP-WGKWAAEIRDPKV---RARVWLGTFDTAEDAARAYDAAAWRIRG 74
               89******.**********943...6**********************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-322588IPR001471AP2/ERF domain
PfamPF008479.8E-132574IPR001471AP2/ERF domain
PROSITE profilePS5103223.3542582IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-212583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-312583IPR001471AP2/ERF domain
CDDcd000181.40E-182684No hitNo description
PRINTSPR003676.4E-112637IPR001471AP2/ERF domain
PRINTSPR003676.4E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGFAGSGNRK MSKRRKGGKR NKKYVYIGIR QRPWGKWAAE IRDPKVRARV WLGTFDTAED  60
AARAYDAAAW RIRGKKAKLN FSDVHRSVDT DLNAESGSSV SNLVSDDYTA NAKTHDAVDG  120
MKKMEEETQN VGDHAAASSC MNMWNTGDWM DYSPVEVLAA SVDMDFSLQY DDWAWSSCQE  180
VGVDDLEESY PYSMFHLWMF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212682663ATERF1
3gcc_A2e-212682663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ACE81e-147D5ACE8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-20ERF family protein