PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008923
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bZIP
Protein Properties Length: 200aa    MW: 22446.2 Da    PI: 10.2166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38829559PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.6e-1148106563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l +l+     l++e+
  Psi008923  48 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTTGLTNEN 106
                9***********************************************99888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-1644108IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9946109IPR004827Basic-leucine zipper domain
PfamPF001702.9E-948100IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-1248100No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-1148103No hitNo description
CDDcd147032.34E-214998No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
XHQHSQSMDG FPSIKPELLL STAEASLAET KKAMSAAKLA DLALIDPKRA KRIWANRQSA  60
ARSKERKMRY ISELERKVQT LQTEATTLSA QLTMLQRDTT GLTNENSELK LRLQSMEQQV  120
HLRDALNDAL REEVQRLKLA TGQGLANGGH MMNYCSSFTP TQPFFQVPHQ SSHTYLAAQQ  180
LQHLHLQSHQ SALNLRNGGT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.137560.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268265.13e-90PREDICTED: probable transcription factor PosF21
RefseqXP_010268266.13e-90PREDICTED: probable transcription factor PosF21
RefseqXP_010268267.13e-90PREDICTED: probable transcription factor PosF21
SwissprotQ040883e-71POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A3S3P9Y82e-94A0A3S3P9Y8_9MAGN; Putative transcription factor PosF21 isoform X1
STRINGXP_010268265.11e-89(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.14e-73bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]