PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009101
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 193aa    MW: 21602 Da    PI: 9.9223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38777882PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.22.9e-182977253
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
               r++h+ +Er+RR+++++ f+eLr+ lP++   ++ K sK eiL kAv++I+s
  Psi009101 29 RVSHKLAERKRRKEMRDLFDELRDQLPQD---RGMKASKWEILSKAVDHIQS 77
               89***************************...******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-182095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1732778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-152977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.54E-142980No hitNo description
Gene3DG3DSA:4.10.280.103.5E-192999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-133384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
TANQAFNALP PDTKEALGGA SYSRSPELRV SHKLAERKRR KEMRDLFDEL RDQLPQDRGM  60
KASKWEILSK AVDHIQSVKR HNADMCREIE ALRREVETLR VSAAAAAAAS GVAYGVPPSY  120
PGPFNGYMAM PGYPPPPPGS MAPPQNVQQH QHQQQQQQQQ QQQGQHQSVQ KHHHQHQANQ  180
NESQSLHTRG PSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RKRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0W0FJR54e-37A0A0W0FJR5_9AGAR; Uncharacterized protein
TrEMBLV2XTY44e-37V2XTY4_MONRO; Bhlh transcription factor-like protein
STRINGXP_007844604.17e-38(Moniliophthora roreri)