PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi009109

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 192aa MW: 19832 Da PI: 6.2214

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-19	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.2	1.6e-20	15	76	39	100
DUF260 39 asnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 asn++kll++l++e+reda+ssl+yeAear++dPvyG+vg i+ lq q++ql+ ela++++ Psi009109 15 ASNISKLLNELSPEQREDAVSSLAYEAEARVKDPVYGCVGAISVLQGQVQQLQRELAEARAD 76 68*******************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.158	1	77	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-19	15	74	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
XSNPISLQAF TRSLASNISK LLNELSPEQR EDAVSSLAYE AEARVKDPVY GCVGAISVLQ 60 GQVQQLQREL AEARADLAHY TAMDMGIQGI HGVPVHHSSQ GLLELRRERI LELARLQGSG 120 GPCNEALGAA AAAAGIYNIT SCPPPTLLPP THPPPACTTC TTIASEGGSG CCSSGGGGVG 180 NSGSIRHYSS PP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-28	15	86	49	120	LOB family transfactor Ramosa2.1
5ly0_B	2e-28	15	86	49	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069297.1	6e-31	protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	M1BJE0	6e-28	M1BJE0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400046644	1e-28	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-30	LBD family protein