PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009403
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 180aa    MW: 20715.9 Da    PI: 10.2246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648941PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.4e-53141411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeel+v+yL+k+v+++++++  +i+e+d+yk++Pw+Lp+k+  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg+dk+v++  ++ +
  Psi009403  14 LPPGFRFYPTDEELMVHYLCKRVASQPFPI-PIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGlNRMK 112
                79****************************.88***************8888899**************************************9888999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfykg+ap+g kt+W+mheyrl
  Psi009403 113 VGVKKALVFYKGKAPRGIKTNWIMHEYRL 141
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6210160IPR003441NAC domain
PROSITE profilePS5100557.49614163IPR003441NAC domain
PfamPF023655.3E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGCKSGPNSA QINLPPGFRF YPTDEELMVH YLCKRVASQP FPIPIIAEID LYKFDPWQLP  60
EKALFGEKEW YFFSPRDRKY PNGSRPNRAA GSGYWKATGT DKPVTAGLNR MKVGVKKALV  120
FYKGKAPRGI KTNWIMHEYR LADSASKAAK RKGSIRVSRV VSYLYYIQIS IYHDFYVNEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-7411704168NO APICAL MERISTEM PROTEIN
1ut4_B3e-7411704168NO APICAL MERISTEM PROTEIN
1ut7_A3e-7411704168NO APICAL MERISTEM PROTEIN
1ut7_B3e-7411704168NO APICAL MERISTEM PROTEIN
3swm_A4e-7411707171NAC domain-containing protein 19
3swm_B4e-7411707171NAC domain-containing protein 19
3swm_C4e-7411707171NAC domain-containing protein 19
3swm_D4e-7411707171NAC domain-containing protein 19
3swp_A4e-7411707171NAC domain-containing protein 19
3swp_B4e-7411707171NAC domain-containing protein 19
3swp_C4e-7411707171NAC domain-containing protein 19
3swp_D4e-7411707171NAC domain-containing protein 19
4dul_A3e-7411704168NAC domain-containing protein 19
4dul_B3e-7411704168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.49060.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792530.18e-82NAC domain-containing protein 2-like isoform X1
SwissprotQ52QH46e-81NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA9NVZ21e-131A9NVZ2_PICSI; Uncharacterized protein
STRINGXP_008792530.13e-81(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-76NAC domain containing protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]