PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009483
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 177aa    MW: 19361.9 Da    PI: 5.1892
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649892PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-2857PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77e-42151141100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+C ++Cvlapyfp+++ +kfa +h++FGasn++kll++lp e r+da+ss+vyeA+ar+rdP yG++g+++++q+ql+ql+++la++++e
  Psi009483  15 PCAACKILRRRCGEKCVLAPYFPSNDLHKFATAHRIFGASNIIKLLQELPAEGRTDAVSSMVYEANARLRDPLYGCAGIVFQMQSQLSQLQSQLATAQAE 114
                7***********************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.57714115IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4015112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASNVGGFRD HAPSPCAACK ILRRRCGEKC VLAPYFPSND LHKFATAHRI FGASNIIKLL  60
QELPAEGRTD AVSSMVYEAN ARLRDPLYGC AGIVFQMQSQ LSQLQSQLAT AQAEILTMRL  120
QQANLLALIT GSADSGETTR PLSPSSSAIS QESNDQQTNL IYFEGEDPLQ LWDDSVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-381411610112LOB family transfactor Ramosa2.1
5ly0_B2e-381411610112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.49660.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227600.14e-63PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR07e-57LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA9NTB01e-129A9NTB0_PICSI; Uncharacterized protein
STRINGGSMUA_Achr7P15500_0013e-61(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-49LOB domain-containing protein 1