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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Psi009534 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 175aa MW: 19967.6 Da PI: 6.9683 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 14.9 | 4.8e-05 | 5 | 38 | 20 | 55 |
HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksLq 55
f++Lr+llP+ + +K + +e + +Av+Y+ +Lq
Psi009534 5 FSRLRSLLPEeN---LRGKRTVSEQVLEAVNYVGHLQ 38
89********66...9********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.53E-6 | 4 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 8.9E-4 | 5 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 175 aa Download sequence Send to blast |
MEVFFSRLRS LLPEENLRGK RTVSEQVLEA VNYVGHLQRK IEDLSAQREK MKVNSDQNAK 60 VSFEKFWDNT PPFGGSDREY PAVKINSVGS GVQICMNSLE HEIVYSDILL ALEEGGLEVV 120 SAASSVINNR VYHTIHAKVF DLNTFNIHTL YQKLWHLIST HHTKIQDLRT TDARA |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Psi.14132 | 0.0 | shoot | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B8LNH5 | 1e-128 | B8LNH5_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25400.1 | 3e-17 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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