PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi009703

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 167aa MW: 18729.2 Da PI: 5.5481

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55413972	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.3e-40	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vh+lFG+ +v+k l++lpee+r da++s+vyeA r rdPv+G+vgvi++lq+++++l++++a++++e Psi009703 17 PCASCKIQRKKCSQSCVLAPYFPQDNPEKFLLVHRLFGNGHVIKSLQELPEEQRGDAVNSMVYEASQRFRDPVHGSVGVINDLQNKIAELQSQMASTQTE 116 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.171	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-38	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MTDMSANTKA EMRSTSPCAS CKIQRKKCSQ SCVLAPYFPQ DNPEKFLLVH RLFGNGHVIK 60 SLQELPEEQR GDAVNSMVYE ASQRFRDPVH GSVGVINDLQ NKIAELQSQM ASTQTELANI 120 NMRHANLLTL LNGGSDPHCY NGSLLQSEDT HVLDDVDPME LWEPLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-33	14	117	8	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-33	14	117	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.2731	0.0	shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461085.1	5e-50	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-48	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	B8LP64	1e-123	B8LP64_PICSI; Uncharacterized protein
STRING	Gorai.012G094200.1	2e-49	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-50	LOB domain-containing protein 1