PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi009839

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 160aa MW: 18148.1 Da PI: 5.091

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S26096303	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.5e-09	27	72	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e +++ + + + ++ +W+++a++++ g+t+ +++ ++ + Psi009839 27 VWTLEQNKRFENTLADFDKDtpdRWDKVAARLP-GKTATDVRKHYED 72 6******************************.*********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.9E-6	24	76	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.22E-11	26	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-4	27	74	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-7	27	73	IPR001005	SANT/Myb domain
CDD	cd00167	2.50E-5	28	74	No hit	No description
PROSITE profile	PS50090	6.806	28	74	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
RRDFKICAMW EMDLPSQGTS LSSSGSVWTL EQNKRFENTL ADFDKDTPDR WDKVAARLPG 60 KTATDVRKHY EDLVDDVTCI EAGCVALPTY SNSSCTLEWI EGKSGDMHGL KQQFGSGGRG 120 SSTKPSEQER KKGVPWTEEE HRYFSSLLQR KFEENLCSDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-19	20	98	3	81	RADIALIS
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007205616.1	2e-46	transcription factor DIVARICATA
Refseq	XP_008239581.1	2e-46	PREDICTED: transcription factor DIVARICATA
Refseq	XP_021814588.1	2e-46	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-42	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A314Z1R7	5e-45	A0A314Z1R7_PRUYE; Transcription factor DIVARICATA
TrEMBL	M5WJ30	5e-45	M5WJ30_PRUPE; Uncharacterized protein
STRING	XP_008239581.1	8e-46	(Prunus mume)
STRING	EMJ06815	8e-46	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-41	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]