PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi009939

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 156aa MW: 17846.2 Da PI: 4.7686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S38844171	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.7e-08	3	30	23	55
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 Lr ++P +K++Ka+i e A++YI++Lq Psi009939 3 LRAIVPMI-----TKMNKASIIEDAIDYIQQLQ 30 78888885.....7******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.544	1	29	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-10	2	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-9	2	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.88E-7	3	34	No hit	No description
Pfam	PF00010	2.1E-5	3	30	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
XSLRAIVPMI TKMNKASIIE DAIDYIQQLQ NQVRVAEEDV VRLKENSTPT SEKKTGREFS 60 HDDYKGESIK ELLEFDVSEV KENENVYSIC LYCKCSPRVV LEVNRVIESM EMTVTYANFN 120 SFDGYILINI IVQRGENGKK LQVDALKSII AKVIME

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.15058	0.0	shoot

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	2e-14	bHLH family protein