PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009979
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17885.6 Da    PI: 8.1794
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647191PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.2e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rq tfskRr g++KKAeELS+LC+a+va+++fsstgkly yss
  Psi009979  9 KRIANASARQMTFSKRRRGLFKKAEELSILCAADVALVVFSSTGKLYNYSS 59
               79***********************************************96 PP
2K-box35.15.7e-13921502284
      K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                +++k++ e   +     l e+Le L+lk+L++Le+q e  l+ iRs+K e+l+++i+elq+k 
  Psi009979  92 KRIKQQFEDASQD----LREELEGLTLKDLEKLEEQFEMELSCIRSQKVEHLVKKINELQQKV 150
                5666666655555....449*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.712161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-32160IPR002100Transcription factor, MADS-box
CDDcd002652.02E-33269No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-28374IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.56974154IPR002487Transcription factor, K-box
PfamPF014866.2E-987150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAREKIEKKR IANASARQMT FSKRRRGLFK KAEELSILCA ADVALVVFSS TGKLYNYSSS  60
SMEVILDKYV LYPSTIQKDG QQILEFEGQD PKRIKQQFED ASQDLREELE GLTLKDLEKL  120
EEQFEMELSC IRSQKVEHLV KKINELQQKV TTYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19172172MEF2C
5f28_B7e-19172172MEF2C
5f28_C7e-19172172MEF2C
5f28_D7e-19172172MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1725KKRIANASARQMTFSKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926365.12e-45MADS-box protein JOINTLESS isoform X1
RefseqXP_010926366.12e-45MADS-box protein JOINTLESS isoform X1
RefseqXP_019707170.12e-45MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY66e-42JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA9P0T81e-107A9P0T8_PICSI; Uncharacterized protein
STRINGXP_008782197.11e-44(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]