PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi010284
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 136aa    MW: 15429.4 Da    PI: 9.7031
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-17348PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1976129356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t eq+++Le+ Fe+ ++++ e++  LAk lgL+ rq+ vWFqNrRa+ k
  Psi010284  76 KKRRLTMEQVKTLEKSFEQGNKLDLERKMLLAKALGLQPRQIAVWFQNRRARSK 129
                45689***********************************************99 PP
2HD-ZIP_I/II94.21.4e-3075136162
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkd 62 
                  ekkrrl+ eqvk+LE+sFe+ +kL+ erK+ la++Lglqprq+avWFqnrRAR ktkqlE+d
    Psi010284  75 EKKRRLTMEQVKTLEKSFEQGNKLDLERKMLLAKALGLQPRQIAVWFQNRRARSKTKQLERD 136
                  69**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-2067133IPR009057Homeodomain-like
SMARTSM003891.5E-1874135IPR001356Homeobox domain
PROSITE profilePS5007116.42275131IPR001356Homeobox domain
PfamPF000462.6E-1676129IPR001356Homeobox domain
CDDcd000862.87E-1676132No hitNo description
Gene3DG3DSA:1.10.10.606.8E-1977134IPR009057Homeodomain-like
PRINTSPR000313.9E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000313.9E-5111127IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSSNNSMTTK GHSAKAMSSS TSVGLQVAGS IRLYECENTR KRSMGFSSNS GALDLSEHDT  60
WEEEDGSDEC LHFGEKKRRL TMEQVKTLEK SFEQGNKLDL ERKMLLAKAL GLQPRQIAVW  120
FQNRRARSKT KQLERD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARSKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020700267.15e-34homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC033e-32ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA9NVG44e-52A9NVG4_PICSI; Uncharacterized protein
STRINGXP_008804470.15e-33(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-34HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]