PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi010382

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

M-type_MADS

Protein Properties

Length: 131aa MW: 14935 Da PI: 9.6079

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S37605334	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.3	3.1e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n ++rq tfskRrng++KKA+ELSvLCda+v +i++ + gkl+e+ss Psi010382 9 KKIMNATRRQATFSKRRNGLFKKANELSVLCDADVGLIVYNTAGKLFEFSS 59 6899*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.427	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-35	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.49E-37	2	72	No hit	No description
SuperFamily	SSF55455	6.8E-30	2	76	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MGRVKREIKK IMNATRRQAT FSKRRNGLFK KANELSVLCD ADVGLIVYNT AGKLFEFSSS 60 SMKMLINKYL KHRDCGESNF SCGGESNFSC QMHACDDEME VEKLKEDINN LSRFCRGDEV 120 EGISSKKKKK X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-20	1	78	1	78	MEF2C
5f28_B	7e-20	1	78	1	78	MEF2C
5f28_C	7e-20	1	78	1	78	MEF2C
5f28_D	7e-20	1	78	1	78	MEF2C
6byy_A	7e-20	1	78	1	78	MEF2 CHIMERA
6byy_B	7e-20	1	78	1	78	MEF2 CHIMERA
6byy_C	7e-20	1	78	1	78	MEF2 CHIMERA
6byy_D	7e-20	1	78	1	78	MEF2 CHIMERA
6bz1_A	7e-20	1	78	1	78	MEF2 CHIMERA
6bz1_B	7e-20	1	78	1	78	MEF2 CHIMERA
6bz1_C	7e-20	1	78	1	78	MEF2 CHIMERA
6bz1_D	7e-20	1	78	1	78	MEF2 CHIMERA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547302.1	9e-28	PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
TrEMBL	A0A0K0M7B0	1e-63	A0A0K0M7B0_PINTB; MADS3 (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-28	MIKC_MADS family protein