PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi010494
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 124aa    MW: 14291.4 Da    PI: 9.2078
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649798PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rqvtfskRr+g++KKAeELS+LC+a+va+i+fsstgkl++yss
  Psi010494  9 KRIANASARQVTFSKRRKGLFKKAEELSILCAADVALIVFSSTGKLHDYSS 59
               79***********************************************96 PP
2K-box61.72.8e-21581233398
      K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                ++ R++ G++Le Lsl++LqqLe+qL+ +l+ +R +K+e+++++i+elq k +++ een++L++++
  Psi010494  58 SSSRNMHGKELEGLSLNDLQQLEEQLKMGLNCVRLQKDEYMVKEINELQDKGRRITEENTELHRQI 123
                567************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.987161IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.60E-32260No hitNo description
SuperFamilySSF554553.53E-27364IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-252338IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.71537124IPR002487Transcription factor, K-box
PRINTSPR004041.1E-253859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-1759123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAREKIELKR IANASARQVT FSKRRKGLFK KAEELSILCA ADVALIVFSS TGKLHDYSSS  60
RNMHGKELEG LSLNDLQQLE EQLKMGLNCV RLQKDEYMVK EINELQDKGR RITEENTELH  120
RQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17160160MEF2C
5f28_B5e-17160160MEF2C
5f28_C5e-17160160MEF2C
5f28_D5e-17160160MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.28880.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the L1 cell layer of the embryo 2 days after pollination. {ECO:0000269|PubMed:15682279}.
UniprotTISSUE SPECIFICITY: Expressed in palea and stamen primordia. {ECO:0000269|PubMed:15682279}.
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620691.11e-42MADS-box transcription factor NMHC5 isoform X4
RefseqXP_014620692.19e-43MADS-box transcription factor NMHC5 isoform X5
SwissprotQ9FUY64e-39JOIN_SOLLC; MADS-box protein JOINTLESS
SwissprotQ9XJ663e-39MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA9NTK22e-84A9NTK2_PICSI; Uncharacterized protein
STRINGXP_010027952.17e-40(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  3. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]