PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi010882
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 87aa    MW: 9938.87 Da    PI: 5.6796
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38773199PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-103774645
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + E++l+++++k+ G + W++Ia +++ gRt++++  +w 
        Psi010882 37 EAEEDLIIRLHKLVGDR-WSLIAGRIP-GRTPEEIEKYWK 74
                     78*************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.6332781IPR017930Myb domain
SMARTSM007175.5E-93179IPR001005SANT/Myb domain
CDDcd001673.22E-83574No hitNo description
SuperFamilySSF466896.01E-93577IPR009057Homeodomain-like
PfamPF002497.1E-103775IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-133775IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MDHADTDQDR LSSSHTDKEV VEGGGGERKT SSTDMNEAEE DLIIRLHKLV GDRWSLIAGR  60
IPGRTPEEIE KYWKSRQQEN SKRKTSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593492.12e-19MYB transcription factor MYB172 isoform X1
RefseqXP_028189654.12e-19MYB-like transcription factor ETC1
TrEMBLK7LVX61e-18K7LVX6_SOYBN; Uncharacterized protein
STRINGGLYMA12G32130.31e-18(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-21MYB_related family protein