PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011030
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 482aa    MW: 55088.6 Da    PI: 8.7044
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55419920PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.32.2e-09104170267
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikeg 67 
                W++  + +L+   ++m  +++rg+l k++W ++++++ +    + s +qCk kw+ l+k y k k +
  Psi011030 104 WPNTAIDVLLLKFEDMCFNVSRGRLGKTHWGQIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLH 170
                9************************************88776377*****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-9104184No hitNo description
Gene3DG3DSA:3.90.190.109.7E-30332475IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527991.77E-33332475IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019114.0E-24332349IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PfamPF031624.5E-55333480IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019114.0E-24369382IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019114.0E-24388402IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019114.0E-24405419IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0035335Biological Processpeptidyl-tyrosine dephosphorylation
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
GDQQHNNKKG STSSIVEPES MSLTHYNLNT VQQSPRASSS QYHHQQHHFR SKQESIACIR  60
SVLQNFMASP SIQSQNPIDN RPPLSLKRKE MTESPSRAQK EALWPNTAID VLLLKFEDMC  120
FNVSRGRLGK THWGQIADAV NAVCSANYSG VQCKYKWNRL KKSYNKAKLH GETSRFLFYK  180
RVERIVHRAS GQKLHEEEEE EEEEEEEMAS EDDDVDSICE AASIESKPSS ASMSATEDDD  240
VHRRPKKRGV TLKSFGYKME QSMNNLTQSM KSIEKTRTDK MKKLLDTQLE ITSILVQNNK  300
MLKRSDGVAA GRSRAMNEAE LICRQQGGIA SFVPPLNFAM VDKGVYRSGF PNHANFPFLK  360
TLKLRSIIYL CPEPYPGVNM EFLRAEEIRF FHFGIKEYKE PIMGISEDDV RDALKILLDI  420
RNHPVLIHCR TGKRPTSCLV GCLRKIQNWC LASVFDEYQR FAGTKTQVSD LQFIERINIP  480
NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A3e-653334793149At1g05000
1xri_B3e-653334793149At1g05000
2q47_A3e-653334793149Probable tyrosine-protein phosphatase At1g05000
2q47_B3e-653334793149Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AEE50.0D5AEE5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-07sequence-specific DNA binding transcription factors