PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011091
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 234aa    MW: 25309.8 Da    PI: 5.4819
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55419190PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-26477PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.7e-1744134186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++  v +L++a+++++   +r+klk+++We+v++++  r+ g    ++++qCk+k+e+++kry++++++ ++  ++ + s++p++++l+
  Psi011091  44 EWSEGAVTTLLDAYESKWLLRNRAKLKGNDWEDVARHVstRSNGTksVKTQTQCKNKIESMKKRYRAEAATLNGSnSNANASSWPLYTRLD 134
                5*************************************99555552267*******************99877765899999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-2042134No hitNo description
CDDcd001670.0068258105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGKVDSLEKP LQRPGGSSNN NNNNNANGDV LTLSKTPERV KRDEWSEGAV TTLLDAYESK  60
WLLRNRAKLK GNDWEDVARH VSTRSNGTKS VKTQTQCKNK IESMKKRYRA EAATLNGSNS  120
NANASSWPLY TRLDGLLRCR TAAVAAGDAN PNPSPNAIGN PPPDLALLES PPPPPPPPPP  180
VEERERQAEG QGQRQEQEQE QGQGQKQEEV ELVPVAAAAA AAQESNQADD GSNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.76850.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523957.11e-50trihelix transcription factor ASIL2
RefseqXP_028228771.11e-50trihelix transcription factor ASIL2-like
TrEMBLA0A0D6R1959e-53A0A0D6R195_ARACU; Uncharacterized protein
STRINGGLYMA04G17330.24e-50(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.17e-45sequence-specific DNA binding transcription factors