PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011285
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 281aa    MW: 30045.9 Da    PI: 8.5009
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421383PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-24967PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.92.4e-3374128358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +v+Y+eClkNhAas+Ggha DGCgEfmps g+egt +alkCaACgCHRnFHRr+++
    Psi011285  74 SVKYRECLKNHAASIGGHANDGCGEFMPS-GDEGTLEALKCAACGCHRNFHRRDTN 128
                  699*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2070128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-3075127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-3076126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.75277126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.6E-31212280IPR009057Homeodomain-like
SuperFamilySSF466894.3E-18212279IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-26218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGAGGNEAEI GMPMSVSYGH MAAAHAQIHE ANSKPNNSNM GADNCSTASD QEIRPLSHEA  60
AAAAAGVSLA KPRSVKYREC LKNHAASIGG HANDGCGEFM PSGDEGTLEA LKCAACGCHR  120
NFHRRDTNNG GGDPSASCYY CCYASNGNGN GSSKRPGGLH LSVPAPHVPL ALPSSPSGIT  180
RSHPQMIMAI RDVGGEDHDH MMSGAGAHAM YMAGHAMKKR FRTKFTQEQK DKMCAFAEKL  240
GWRIQKHDDL AVQQFCMDVG VKRHVLKVWM HNNKHTLAKK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-282192761875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403385.14e-70PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_009403391.14e-70PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018679591.14e-70PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ6YXH51e-61ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLD5AAI20.0D5AAI2_PICSI; Uncharacterized protein
STRINGAquca_007_00229.12e-67(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-62homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]