PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011371
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 433aa    MW: 47084.9 Da    PI: 8.1442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420844PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-11389PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.95e-34173231159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Psi011371 173 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 231
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-38158233IPR003657WRKY domain
SuperFamilySSF1182905.49E-30165233IPR003657WRKY domain
PROSITE profilePS5081139.054168233IPR003657WRKY domain
SMARTSM007744.1E-40173232IPR003657WRKY domain
PfamPF031068.2E-27174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
XKGTHNHPKP QPSRRSAVGS AHMIHEGAES TEGPGATIKV EGGSTWRNTE FGLLKDKDAA  60
HCSKAWKNEL LERSSSASGV TDLSDPSSTA QVQSSSRLDS LGTPELSSTL ASDDDMEDGG  120
TNDSKSLGDD GDENESDSKR RKKENNTVDI VAASRAIREP RVVVQTTSEI DILDDGYRWR  180
KYGQKVVKGN PNPRSYYKCT NAGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPAARNSSH  240
DNAAKGNGAA PLAMQTNGPA PMNTIPRSVP QVQDIVSRPV PQVQGIVSRF DRHLDPRNEY  300
GKRAYFEKVV DGNLRLQDKN AGSLDLKMGA GMGFGMFGLG NSHTDKRQIA EGHPPFPMQI  360
HGTTNHGLPG IELSGKPIVP IQPYFGQAKD NGMRFLRPKE EQNDDSGFGN QLPFNPTNST  420
LYQQIMGRLS MGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-39164234878Probable WRKY transcription factor 4
2lex_A4e-39164234878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.1480.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6VWJ65e-59WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLD5ABY60.0D5ABY6_PICSI; Uncharacterized protein
STRINGAquca_058_00185.11e-109(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.17e-59WRKY family protein