PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011424
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 307aa    MW: 33872.5 Da    PI: 6.505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-3470PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-09268288526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++far G+Ck G++C+F Hg
  Psi011424 268 PCMYFAR-GYCKNGSNCRFLHG 288
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-5265289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6266288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6267288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023268290IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-7268288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDAYEATRIV FSRIQSLEPE NVSKIMGYLL LQDHGEQEMI RLAFSPDSLI QSMIIKAKKD  60
LGLMQQQGTP APTVSSYLSR INRPPHLPLQ SAQISQSRAF SSPTALSPHA APWGSHISQQ  120
TRPLSNNFNS ILNEIQTNTS TASTINSTSN GYLNFSLSPM PDQANSLPLV YNNEHPGLVE  180
EFQLQDQLPF LNDSPESAKS HANYLSYPEM LQAYCNGNQP LSMDHLSPTA ANNSYPGTTH  240
LSKQSSSISD IYNLASESVA GSALAWKPCM YFARGYCKNG SNCRFLHGNY GGQVRSEISN  300
DHTEKFX