PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011469
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 235aa    MW: 26408.8 Da    PI: 8.1325
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420686PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox185.1e-061675956
               HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
               +++++e+e++ e      p ++++  LA+k            ++ +qV +WFqNrR  +k
  Psi011469 16 PQEVQEMEKFLEDgkGAVPPRDTISSLAEKFsaaperagkiLVQWKQVWTWFQNRRHAQK 75
               667777777777433677888888888888888888888778999***********8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-81378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-51377IPR009057Homeodomain-like
PROSITE profilePS500718.7781377IPR001356Homeobox domain
PfamPF167193.4E-39115232IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRPPASGAP VFRFFPQEVQ EMEKFLEDGK GAVPPRDTIS SLAEKFSAAP ERAGKILVQW  60
KQVWTWFQNR RHAQKAKGTK VPGNTAPSPR DDSGAKRVVT NSAAVPSGRN VLVASEMEFE  120
AKSARDGAWY DVASFVTHRM FESGDPEVRV RFAGFGAEED EWVNVKKCVR QRSLPCEASE  180
CVVMLSGDLV LCFQEGKEQA LYFDAHVLDA QRRRHDARGC RCRFLVRYDH DQSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-441142341121SHH1 SAWADEE
4iur_B5e-441142341121SHH1 SAWADEE
4iut_A5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-441142341121SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.11e-124PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.11e-124PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-103SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLD5ACD81e-173D5ACD8_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-123(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.33e-93sequence-specific DNA binding transcription factors;sequence-specific DNA binding