PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011503
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 207aa    MW: 23765.2 Da    PI: 6.5239
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422063PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-21184PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-081561892154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++e+++L +++gL+ +q+ +WF N+R +
  Psi011503 156 KWPYPTEDEKTRLVQETGLQLKQINNWFINQRKR 189
                569*****************************87 PP
2ELK31.83.2e-11110131122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y++++ ++++E++
  Psi011503 110 ELKHELKQGYRSRIEDIREEIL 131
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.5E-20152IPR005541KNOX2
PfamPF037911.2E-16251IPR005541KNOX2
PfamPF037893.1E-5110131IPR005539ELK domain
PROSITE profilePS5121310.301110130IPR005539ELK domain
SMARTSM011880.0016110131IPR005539ELK domain
PROSITE profilePS5007111.742130193IPR001356Homeobox domain
SuperFamilySSF466897.7E-17132197IPR009057Homeodomain-like
SMARTSM003894.7E-11132197IPR001356Homeobox domain
CDDcd000861.50E-10133192No hitNo description
Gene3DG3DSA:1.10.10.602.5E-25137194IPR009057Homeodomain-like
PfamPF059205.7E-18150189IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
XGEKEELDRF LAQYVLLLSS FKEQLQQHVR VHAMEAVMAC WELEQSLHTL TGVSPGEGTG  60
ATMSDDEDDQ ADSDTNLFDL GLDGQDGVGS FGPLIPTGNE RSLMERVRQE LKHELKQGYR  120
SRIEDIREEI LRKRRAGKLP GDTTSVLKNW WQAHSKWPYP TEDEKTRLVQ ETGLQLKQIN  180
NWFINQRKRN WHSNPSSSSA SNAKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-14133197872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186206RKRNWHSNPSSSSASNAKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739258.11e-124homeobox protein knotted-1-like 3 isoform X1
RefseqXP_021739266.11e-124homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-118KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3G6J9M71e-147A0A3G6J9M7_PINTA; Homeobox protein knotted-1-like 3
STRINGXP_007136985.11e-123(Phaseolus vulgaris)
STRINGGSMUA_Achr7P05170_0011e-123(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-108KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]