PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011670
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 483aa    MW: 53964.8 Da    PI: 5.3243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072080PU_unrefUnigeneView CDS
gnl|UG|Psi#S50822799PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-6146PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
        Psi011670 16 KGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding47.54.1e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
        Psi011670  69 RGNFSLKEEQTIIHLHQILGNR-WSAIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25866IPR009057Homeodomain-like
PROSITE profilePS5129424.3091167IPR017930Myb domain
SuperFamilySSF466893.74E-3112110IPR009057Homeodomain-like
SMARTSM007171.2E-141565IPR001005SANT/Myb domain
PfamPF002497.5E-171663IPR001005SANT/Myb domain
CDDcd001671.20E-121863No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2567118IPR009057Homeodomain-like
SMARTSM007178.9E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129418.43868118IPR017930Myb domain
PfamPF002495.2E-1469114IPR001005SANT/Myb domain
CDDcd001674.86E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
EGMGRAPRCD EMGLKKGPWT PEEDQILISY INKHGHGNWR ALPKQAGLMR CGKSCRLRWT  60
NYLRPDIKRG NFSLKEEQTI IHLHQILGNR WSAIASHLPG RTDNEIKNVW NTHLKKRLLQ  120
IGVDPVTHAP RGYNVSSCYA AVSIRDHHGE QADHHLQSHG CTSESVKKVF RKEGNSIEPL  180
ARQPLQETKA LQDEGASNNS PLIQKTPDDQ NMMNSDQHEA YYSLNSSGNN YTYSSDSSRV  240
LSTKPMELVS ASAFGLCSGM DKEQNNSEKL TAGMPFDYSK TGEKKMLAVD YTSLLQSSYT  300
DSLKFILDDD GEDSNSSEYQ VNWKPSAGNQ QNFVSLGCGE FQDDDNAVVQ QADPEGSLAY  360
DSSMLNSNVE FWRHELSLWP ATENNTLGEQ VLAYSSSNGA AAAVSGQQKK VKMEPSGTNF  420
SVEQFLELAD HSMGTNMEGK SNIYDRWPDM NLADQDQGME YWVNLLRQVG PLPFLETISP  480
PDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27141185108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI20.0C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.14e-76myb domain protein 107