PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011721
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 175aa    MW: 19561.1 Da    PI: 6.709
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-9202PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.38.1e-41251251101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +Ca+Ck++r+kC+++Cvlapyfp+ +p+kf  vhk+FG+ +v+kll++lp e+r da+ss+vyeA  r rdPv+G++gvi++lq+++++l+++la+++++
  Psi011721  25 PCAGCKIQRKKCSQNCVLAPYFPQGKPHKFLLVHKVFGNGHVVKLLQDLPAEQRGDAVSSMVYEASQRFRDPVHGCAGVINDLQNKVAELQSQLASTQTQ 124
                7***********************************************************************************************9987 PP

     DUF260 101 l 101
                l
  Psi011721 125 L 125
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.3524125IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3925122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPTPNNRKMS DMSAKSKPET WSTSPCAGCK IQRKKCSQNC VLAPYFPQGK PHKFLLVHKV  60
FGNGHVVKLL QDLPAEQRGD AVSSMVYEAS QRFRDPVHGC AGVINDLQNK VAELQSQLAS  120
TQTQLANISM HHANLLTIFN EGSGPHFYNG SLQENEDTHT LDDDEPMELW EPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-34221258111LOB family transfactor Ramosa2.1
5ly0_B1e-34221258111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449770.19e-52PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016671354.18e-52PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-48LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI91e-123B8LQI9_PICSI; Uncharacterized protein
STRINGAquca_027_00112.17e-52(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-44LOB domain-containing protein 1