PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi011727

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 391aa MW: 42416.4 Da PI: 7.4134

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50072974	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-25374	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.6e-13	41	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+++E++++++a +++ + Wk+I + +g +t q++s+ qky Psi011727 41 RESWSEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 85 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-16	35	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.966	36	90	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.6E-18	39	88	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-10	40	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-6	40	81	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-11	41	85	IPR001005	SANT/Myb domain
CDD	cd00167	6.02E-8	43	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MALPGLAPNL SAAAVSVSVS ASASEDSAKK IRKPYTITKS RESWSEQEHD KFLEALQLFD 60 RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTREHVPP PRPKRKASHP YPQKASKNVP 120 VSQQVSPAFP PATSQLDSGY YPRAESSSIL TKSGSSCPTV SSWVHHNIPS IDVSFVEKDD 180 GGPAGIATAN NCSSGSTESS PHTWPPHSEI PEKGSESLPV RVKPDFSQVY KFIGSVFDPS 240 TTGHLKKLKE MDPIDLETVL LLMRNLSINL SSPDFEEHKL FLSVCDMNPQ DAGPVIANQT 300 DECMAVPGTA ATQPSDLWND PLRSVNLGSV KGHEKEDPNS RQKSHDLKGS ADSKHSDPDG 360 TSVNGTAASF HSNLAKTCGM TRSCFSNEAP T

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MALPGLAPNL SAAAVSVSVS ASASEDSAKK IRKPYTITKS RESWSEQEHD KFLEALQLFD  60
RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTREHVPP PRPKRKASHP YPQKASKNVP  120
VSQQVSPAFP PATSQLDSGY YPRAESSSIL TKSGSSCPTV SSWVHHNIPS IDVSFVEKDD  180
GGPAGIATAN NCSSGSTESS PHTWPPHSEI PEKGSESLPV RVKPDFSQVY KFIGSVFDPS  240
TTGHLKKLKE MDPIDLETVL LLMRNLSINL SSPDFEEHKL FLSVCDMNPQ DAGPVIANQT  300
DECMAVPGTA ATQPSDLWND PLRSVNLGSV KGHEKEDPNS RQKSHDLKGS ADSKHSDPDG  360
TSVNGTAASF HSNLAKTCGM TRSCFSNEAP T

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.2115	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276889.1	1e-126	PREDICTED: protein REVEILLE 6-like
Swissprot	Q8H0W3	2e-95	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	B8LMI5	0.0	B8LMI5_PICSI; Uncharacterized protein
STRING	XP_010276889.1	1e-126	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	1e-95	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]