PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011779
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 173aa    MW: 19570.8 Da    PI: 7.5991
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073082PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-28157PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.51.5e-33107163360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  +vrY+eC+kNhAas+Gg+avDGCgEfmps geegt+ alkCaAC+CHRnFHRreve e
    Psi011779 107 AVRYRECRKNHAASIGGYAVDGCGEFMPS-GEEGTSGALKCAACNCHRNFHRREVEGE 163
                  79**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-25101168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-31108160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-30109160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.172110159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDLGMNREVQ VSIPMPSNYH QTIQESSRLQ QIYAKTLGIV EGMSPPEDLR SQVQGMRPPH  60
HVHETTAAAR PGPPPPVHED MRTQQHQQQQ HYPQENNRNA DNILIKAVRY RECRKNHAAS  120
IGGYAVDGCG EFMPSGEEGT SGALKCAACN CHRNFHRREV EGENRCDCHH TRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.155730.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022740047.19e-32mini zinc finger protein 2-like
TrEMBLB8LM891e-126B8LM89_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-29mini zinc finger 2