PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011842
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 289aa    MW: 32352.5 Da    PI: 8.1518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421037PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13110159255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+ h   ErrRR+ +N+ f++L + lP +      K +K++++ ++++YI++Lq
  Psi011842 110 REIHVLSERRRRSGMNQLFSKLHSFLPDQ----TAKTDKISVVAETINYIHYLQ 159
                7779999*********************8....69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.22E-13106163No hitNo description
SuperFamilySSF474597.46E-15107166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.119108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14108167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-11110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDDLSAVVTK CTNLNVFEKL YAYPGLIPRS GCGSVNSIPN VYSQVSIDSD NNERAHCMHR  60
KFAAKAAQPM QQFPSNKRRR DVENAEDWKY KALKRNRCNG PETSSSVSER EIHVLSERRR  120
RSGMNQLFSK LHSFLPDQTA KTDKISVVAE TINYIHYLQQ RLRTRSNKRA GGADTAASSE  180
SHETDNILSN TDSSDYAILP EISVKSHADK DHFITIKCAK KGNLLPSIIL VAEGQNLEVM  240
DAFVSTNDTV AFHCLHLKAL HTLDAAGREA FMDTLNMLIK SELQISLEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109120REIHVLSERRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABF70.0D5ABF7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.12e-11ABA-inducible BHLH-type transcription factor