PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011898
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 438aa    MW: 48169.4 Da    PI: 5.7347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072537PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-2425PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd+ l+ +++ +G g W+t +++ g+ R++k+c++rw +yl
        Psi011898  5 RGPWTPEEDLCLASYIEAHGEGGWRTLPKKAGLLRCGKSCRLRWMNYL 52
                     89******************************99************97 PP
2Myb_DNA-binding49.97.4e-1663103648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +eE++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l
        Psi011898  63 PEEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEVKNYWNTHL 103
                      7****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.366152IPR017930Myb domain
SuperFamilySSF466891.68E-28299IPR009057Homeodomain-like
SMARTSM007171.2E-11454IPR001005SANT/Myb domain
PfamPF002496.5E-15552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20659IPR009057Homeodomain-like
CDDcd001674.36E-9752No hitNo description
PROSITE profilePS5129425.17853107IPR017930Myb domain
SMARTSM007171.8E-1457105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2460108IPR009057Homeodomain-like
CDDcd001672.37E-1263103No hitNo description
PfamPF002492.7E-1463103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
XGLNRGPWTP EEDLCLASYI EAHGEGGWRT LPKKAGLLRC GKSCRLRWMN YLRPDVKHGH  60
ILPEEEDLIL RLHRLLGNRW SLIAGRMPGR TDNEVKNYWN THLSKKLISQ GIDPRTHKPL  120
SESEDICSSP GNSELSHKSQ KENNAEIPRN FADGTADFQD AVASKGGAIA EDQTSGKSPA  180
NQLLESSPSQ PASVAVDFVS RPPSISSSPH SFQQSITSTC VPGGVSDSVD INHNKGCKQI  240
SFPLLNTACF NSSAQEEVAR DYLDQYLMKN PVTNSNDMIT STVRLSSALQ NAPFVGQFDS  300
SHAFMSGNAL LNEKRQMSQS AQALEMEPHP SLVHPSEEGT YNKLSHTTCA VSDQITAFNY  360
QYLISPTATG AALVDFNSDI FPSFVEPFIN EELQLQEPSV QTSIAQNIEL CPSSQPKAVN  420
LSNYDLWSML SPSSQYRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2531075108B-MYB
1h8a_C9e-25310725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.141710.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNN40.0B8LNN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-67myb domain protein 5