PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011994
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family BBR-BPC
Protein Properties Length: 313aa    MW: 34807.5 Da    PI: 9.6912
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38829994PU_unrefUnigeneView CDS
gnl|UG|Psi#S50072450PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-6344PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind344.23.1e-10513131301
  GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvg 98 
                mdddg  + r++   e++  +k++ gl+ ms++aerda+i ern+a+sekkaa+ae++ a  qrd a a+rn a++erd +++al +++++    + + +
  Psi011994   1 MDDDGRLDiRHWDTLEQS--VKDHPGLKFMSVLAERDAAILERNTAFSEKKAAFAEKETAIFQRDVAYADRNTAILERDAAAAALDYARDGGWnGQRSLS 98 
                9************98887..*******************************************************************9998764567789 PP

  GAGA_bind  99 vqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186
                +++ls++k ++ l +  +p ++   ++ +r  +     p+ ea++ ++ +k+ k+++++k+  ++  +k k  ++++k+  +k++ +++           
  Psi011994  99 CGTLSNAKILQVLAE--NPTFSAREYQtMRPINVAFPAPVLEAPPYEEPQKTAKRTSKKKDGEKESPSKRKSDGSEPKSLRQKKQRKPSvtteeglngev 196
                999*99999998777..78888888887888899999999998888888888877766666555555555555555544444444333356778999*** PP

  GAGA_bind 187 ..skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284
                  +k+e+k++d+v+ng+ +D+s++P+PvC+CtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP++++rrgaR+agrKmS+gaf+klLe+L aeGy+l+ p+D
  Psi011994 197 tvVKKEQKNLDVVINGIVFDISAMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGYNLNYPID 296
                *9************************************************************************************************** PP

  GAGA_bind 285 LkdhWAkHGtnkfvtir 301
                Lk++WAkHGtnkfvtir
  Psi011994 297 LKSYWAKHGTNKFVTIR 313
                ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.2E-981313IPR010409GAGA-binding transcriptional activator
SMARTSM012261.6E-1221313IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDDGRLDIR HWDTLEQSVK DHPGLKFMSV LAERDAAILE RNTAFSEKKA AFAEKETAIF  60
QRDVAYADRN TAILERDAAA AALDYARDGG WNGQRSLSCG TLSNAKILQV LAENPTFSAR  120
EYQTMRPINV AFPAPVLEAP PYEEPQKTAK RTSKKKDGEK ESPSKRKSDG SEPKSLRQKK  180
QRKPSVTTEE GLNGEVTVVK KEQKNLDVVI NGIVFDISAM PIPVCTCTGV AQQCYRWGNG  240
GWQSACCTTS ISMYPLPMNP NRRGARVAGR KMSGGAFRKL LERLGAEGYN LNYPIDLKSY  300
WAKHGTNKFV TIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.102110.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852993.31e-98LOW QUALITY PROTEIN: barley B recombinant-like protein D
TrEMBLB8LNW90.0B8LNW9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.26e-64basic pentacysteine 6